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Muscle Model Explorer

OpenWorm/Muscle-Model-Explorer

Understand the way the muscle model is built up via NeuroML2 to produce cell membrane dynamics!

 

Neil Shah

Expert

Awarded badge on September 22, 2016

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Responses look great! Badge awarded.
Small f7c546e346f4b9e31efe4fad3148d166 nshah Over 2 years ago

Badge Portfolio

Earn the pre requisite badges

Evidence visible to public
Screenshot of your badgelist profile with the Hodgkin-Huxley tutorial badge (http://bit.ly/2bJO9VW) and the Muscle Model builder badge (http://bit.ly/2bKjCTw) successfully earned. More Info

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Run the figure 2A code & compare to paper

Evidence visible to public
On the command line in the NeuroML2 directory, run: pynml LEMS_Figure2A.xml Find figure 2A in the Boyle & Cohen 2008 paper. (http://bit.ly/2cjXnce) Take a single screenshot with paper and model figures. Arrange the model figure that most closely matches the paper figure next to each other. More Info

Full figure 202a

Run the figure 2B code & compare to paper

Evidence visible to public
On the command line in the NeuroML2 directory, run: pynml LEMS_Figure2B.xml Find figure 2B in the Boyle & Cohen 2008 paper. (http://bit.ly/2cjXnce) Take a single screenshot with paper and model figures. Arrange the model figure that most closely matches the paper figure next to each other. More Info

Full figure 202b